http://www.netvouz.com/bioinformatics/tag/sequencing?feed=rss bioinformatics's bookmarks tagged "sequencing" on Netvouz http://code.google.com/p/bedtools/ "The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage." bioinformatics Fri, 22 Oct 2010 21:48:33 GMT http://www.ebi.ac.uk/embl/Documentation/ENA-Reads.html "The European Nucleotide Archive accepts data generated by next-generation sequencing methodologies such 454, Illumina and ABI SOLiD. This is a new service that will provide utility for those generating and using data for such applications as genome assembly, re-sequencing for polymorphism analysis, gene expression, epigenomics and others. The data will be deposited in the European Read Archive (ERA) which works in close collaboration with the NCBI Short Read Archive (SRA). An ERA submission consists of trace data files and XML meta-data files. ERA uses the same XML meta-data formats as SRA." bioinformatics Fri, 04 Sep 2009 21:44:17 GMT http://maq.sourceforge.net/fastq.shtml "FASTQ format stores sequences and Phred qualities in a single file." bioinformatics Fri, 13 Aug 2010 17:39:59 GMT http://www.broadinstitute.org/gsa/wiki/index.php/HLA_caller_algorithm "... generic algorithm to call HLA alleles at 4-digit resolution from next-generation sequence data" bioinformatics Fri, 22 Oct 2010 22:01:12 GMT http://www.mged.org/minseqe/ bioinformatics Fri, 04 Dec 2009 15:53:49 GMT